Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 239661..239929 | Replicon | chromosome |
| Accession | NZ_CP053231 | ||
| Organism | Escherichia coli strain SCU-306 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 239789..239891 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 239661..239929 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ44_RS01005 | 236215..236877 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ44_RS01010 | 236900..237556 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ44_RS01015 | 237658..237888 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ44_RS01020 | 238027..238401 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ44_RS01025 | 238405..239277 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ44_RS01030 | 239290..239631 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 239661..239929 | - | 269 | - | - | Antitoxin |
| - | 239789..239891 | + | 103 | - | - | Toxin |
| HHJ44_RS01035 | 240026..240682 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| HHJ44_RS01040 | 240683..240874 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ44_RS01045 | 240979..241215 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ44_RS01050 | 241333..242772 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T156287 NZ_CP053231:239789-239891 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT156287 NZ_CP053231:c239929-239661 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
