Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 93050..94673 Replicon plasmid pMS-37a
Accession NZ_CP053191
Organism Enterobacter hormaechei strain EGYMCRVIM

Toxin (Protein)


Gene name hipA Uniprot ID C1IUI3
Locus tag HK406_RS22905 Protein ID WP_000088044.1
Coordinates 93348..94673 (+) Length 442 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID A0A6M3PBR7
Locus tag HK406_RS22900 Protein ID WP_012477377.1
Coordinates 93050..93343 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HK406_RS22880 88849..89241 + 393 WP_000341066.1 hypothetical protein -
HK406_RS22885 89900..90556 + 657 WP_000462754.1 trypsin-like serine protease -
HK406_RS22890 90759..91256 + 498 WP_000340139.1 membrane protein -
HK406_RS22895 91261..92649 + 1389 WP_012695445.1 hypothetical protein -
HK406_RS22900 93050..93343 + 294 WP_012477377.1 helix-turn-helix transcriptional regulator Antitoxin
HK406_RS22905 93348..94673 + 1326 WP_000088044.1 type II toxin-antitoxin system HipA family toxin Toxin
HK406_RS22910 94734..94940 + 207 WP_000134171.1 hypothetical protein -
HK406_RS22915 95041..95451 + 411 WP_000985909.1 hypothetical protein -
HK406_RS22920 95464..95892 + 429 Protein_91 hypothetical protein -
HK406_RS22925 96170..97174 - 1005 WP_000427623.1 IS110-like element IS4321 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid blaVIM-1 / aac(6')-Il / dfrA1 / aadA1 / qacE / sul1 / tet(A) / mcr-9 - 1..270915 270915


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA, N-terminal subdomain 1

(8-108)

Antitoxin

Cro/C1-type helix-turn-helix domain

(21-69)


Sequences

Toxin        


Download         Length: 442 a.a.        Molecular weight: 50333.32 Da        Isoelectric Point: 6.5044

>T156236 WP_000088044.1 NZ_CP053191:93348-94673 [Enterobacter hormaechei]
MSRKQQRLAIWMNGIKVGYWEKSKGVDSLQYLPDWSADEQGRPLSLSLPFTPGNQVWRGNVVRDYFDNLLPDSEGIRRRL
AMRYKADSLEPFDLLTELGKDCVGAIQLLHDGDEPTDLYSVKYHPLTESEIAATLRNTTETLLPGRPEDNDDLRLSIAGA
QEKTALLWHEDRWCMPEGNTPTTHIFKLPLGLVGNMKADMRSSVENEWLCSVLLEQYGLPVARTQIAHFEDQKALVVERF
DRKWSGNGQWIIRLPQEDMCQALGISPLRKYQADGGPGISEIMEVLSNSDRAERDKAQFFMTQIVFWMMAATDGHAKNFS
ISIGPQGRYHLTPLYDVLSAWPVIGHGNNQISWQKCKLAMAVRGSSNYYQIYRIQRRHWIRHGEITGLSKQQTEAMIEEI
IARTPGVIERVSGLLPDQFPQQLAESIFDGMRQQCRRLAEK

Download         Length: 1326 bp

>T156236 NZ_CP068999:22659-22934 [Sulfitobacter mediterraneus]
TTGCCAAATCTTGAATGGAAAGCCACGGCCATAGCCGACTTGCTGGCAATCATTGACTACATCTCTGACGACAACCCGGA
TGCCGCCCAAGTTCTCAAAGACGAGATTGAACAAAAGACGTCCCTCCTTCCAGAACGCCCTCAGATGTACCGCGCGGGCC
GTGTGGACGGGACTAGGGAGATGGTTGTTCGGCCGAACTACATCGTGGTTTATGCTGAAAGCCCTGAGATGGTGACCATT
TTGCGCGTACTTCATGCTGCGCAGCAGTGGCCATGA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10860.30 Da        Isoelectric Point: 10.3134

>AT156236 WP_012477377.1 NZ_CP053191:93050-93343 [Enterobacter hormaechei]
INNDYPLNTLNQLRPLLIGFRKANGLTQKDLSERLGVTQQTYSRLEANPASASIERLFKVFSILGVKISFSSTTASSEGK
QTEEMLKSNSPARQEKW

Download         Length: 294 bp

>AT156236 NZ_CP068999:22373-22672 [Sulfitobacter mediterraneus]
ATGCCTGCCCAAACATCCATGCTTCATGTCCGTGTTGACGATCAGCTGAAAGCACAGGCTTCGGACGCACTTGCGGGCGT
CGGTCTGACGCTCTCCGACGCGGTGCGTATTCTTCTGACCCGCGTGGCCGCAGAAGGCGGCTTGCCTGCCGGATTGACCG
CTGATCCGGATGCCTATGACGCCTGGTTCAGGGCGAAGGTACAGGAAGCGCTGGACGATCCAAGGCCCACAACGCCCCAT
TCCAAGGCGATGCAAGACGCCCAGGCATTGATTGACGGGAAGCGCCTTGCCAAATCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2S1XXW1

Antitoxin

Source ID Structure
AlphaFold DB A0A6M3PBR7

References