Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2753728..2753927 | Replicon | chromosome |
| Accession | NZ_CP053190 | ||
| Organism | Enterobacter hormaechei strain EGYMCRVIM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2753731..2753834 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2753728..2753927 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK406_RS13335 | 2749986..2751434 | + | 1449 | WP_205733417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HK406_RS13340 | 2751541..2751780 | + | 240 | WP_003859885.1 | YebV family protein | - |
| HK406_RS13345 | 2751815..2752459 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| HK406_RS13350 | 2752627..2753607 | + | 981 | WP_109948696.1 | VirK/YbjX family protein | - |
| HK406_RS13355 | 2753653..2753850 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2753728..2753927 | + | 200 | - | - | Antitoxin |
| - | 2753731..2753834 | - | 104 | - | - | Toxin |
| HK406_RS13360 | 2753976..2754314 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HK406_RS13365 | 2754331..2755200 | - | 870 | WP_045341063.1 | copper homeostasis membrane protein CopD | - |
| HK406_RS13370 | 2755202..2755573 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| HK406_RS13375 | 2755711..2755941 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HK406_RS13380 | 2756053..2756703 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| HK406_RS13385 | 2756728..2757390 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156227 NZ_CP053190:c2753834-2753731 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT156227 NZ_CP053190:2753728-2753927 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
