Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2762208..2762409 | Replicon | chromosome |
| Accession | NZ_CP053103 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain Ec61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2762213..2762316 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2762208..2762409 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLA96_RS13055 | 2758468..2759916 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HLA96_RS13060 | 2760023..2760262 | + | 240 | WP_003859885.1 | YebV family protein | - |
| HLA96_RS13065 | 2760297..2760941 | - | 645 | WP_123060434.1 | protein-serine/threonine phosphatase | - |
| HLA96_RS13070 | 2761109..2762089 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| HLA96_RS13075 | 2762135..2762332 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2762208..2762409 | + | 202 | - | - | Antitoxin |
| - | 2762213..2762316 | - | 104 | - | - | Toxin |
| HLA96_RS13080 | 2762458..2762796 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HLA96_RS13085 | 2762813..2763682 | - | 870 | WP_058675126.1 | copper homeostasis membrane protein CopD | - |
| HLA96_RS13090 | 2763684..2764055 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| HLA96_RS13095 | 2764193..2764423 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HLA96_RS13100 | 2764535..2765185 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| HLA96_RS13105 | 2765210..2765872 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156144 NZ_CP053103:c2762316-2762213 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT156144 NZ_CP053103:2762208-2762409 [Enterobacter hormaechei subsp. xiangfangensis]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACATTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACATTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
