Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2468354..2468622 | Replicon | chromosome |
| Accession | NZ_CP053080 | ||
| Organism | Escherichia coli strain HB37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2468482..2468584 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2468354..2468622 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKW69_RS11640 | 2464906..2465568 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HKW69_RS11645 | 2465592..2466248 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| HKW69_RS11650 | 2466351..2466581 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HKW69_RS11655 | 2466720..2467094 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HKW69_RS11660 | 2467098..2467970 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HKW69_RS11665 | 2467983..2468324 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2468354..2468622 | - | 269 | - | - | Antitoxin |
| - | 2468482..2468584 | + | 103 | - | - | Toxin |
| HKW69_RS11670 | 2468719..2469375 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HKW69_RS11675 | 2469376..2469567 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HKW69_RS11680 | 2469672..2469908 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HKW69_RS11685 | 2470026..2471465 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155971 NZ_CP053080:2468482-2468584 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155971 NZ_CP053080:c2468622-2468354 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
