Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2241911..2242179 | Replicon | chromosome |
| Accession | NZ_CP053079 | ||
| Organism | Escherichia coli strain K56-43-un | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2242039..2242141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2241911..2242179 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK408_RS10435 | 2238464..2239126 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HK408_RS10440 | 2239150..2239806 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HK408_RS10445 | 2239908..2240138 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HK408_RS10450 | 2240277..2240651 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HK408_RS10455 | 2240655..2241527 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HK408_RS10460 | 2241540..2241881 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2241911..2242179 | - | 269 | - | - | Antitoxin |
| - | 2242039..2242141 | + | 103 | - | - | Toxin |
| HK408_RS10465 | 2242276..2242932 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| HK408_RS10470 | 2242933..2243124 | - | 192 | WP_024186842.1 | YebW family protein | - |
| HK408_RS10475 | 2243229..2243465 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HK408_RS10480 | 2243584..2245023 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155944 NZ_CP053079:2242039-2242141 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155944 NZ_CP053079:c2242179-2241911 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
