Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1919445..1919713 | Replicon | chromosome |
| Accession | NZ_CP053045 | ||
| Organism | Escherichia fergusonii strain HNCF11W | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1919572..1919675 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1919445..1919713 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG538_RS09030 | 1915995..1916657 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HG538_RS09035 | 1916681..1917337 | - | 657 | WP_000075606.1 | carbon-nitrogen hydrolase family protein | - |
| HG538_RS09040 | 1917444..1917674 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HG538_RS09045 | 1917813..1918187 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HG538_RS09050 | 1918190..1919062 | + | 873 | WP_000928496.1 | copper homeostasis membrane protein CopD | - |
| HG538_RS09055 | 1919074..1919415 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1919445..1919713 | - | 269 | - | - | Antitoxin |
| - | 1919572..1919675 | + | 104 | - | - | Toxin |
| HG538_RS09060 | 1919809..1920465 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HG538_RS09065 | 1920466..1920657 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HG538_RS09070 | 1920762..1920998 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HG538_RS09075 | 1921116..1922555 | - | 1440 | WP_002432103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155871 NZ_CP053045:1919572-1919675 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155871 NZ_CP053045:c1919713-1919445 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
