Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1870837..1870982 | Replicon | chromosome |
| Accession | NZ_CP053035 | ||
| Organism | Klebsiella pneumoniae strain P35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1870873..1870975 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1870837..1870982 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKJ75_RS09010 | 1865967..1868027 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HKJ75_RS09015 | 1868031..1868690 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| HKJ75_RS09020 | 1868769..1868999 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HKJ75_RS09025 | 1869112..1869486 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HKJ75_RS09030 | 1869490..1870359 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HKJ75_RS09035 | 1870376..1870714 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1870837..1870982 | - | 146 | - | - | Antitoxin |
| - | 1870873..1870975 | + | 103 | - | - | Toxin |
| HKJ75_RS09040 | 1871351..1871494 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HKJ75_RS09045 | 1871599..1872567 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HKJ75_RS09050 | 1872724..1873377 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HKJ75_RS09055 | 1873374..1873565 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HKJ75_RS09060 | 1873663..1873902 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HKJ75_RS09065 | 1874018..1875451 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155833 NZ_CP053035:1870873-1870975 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT155833 NZ_CP053035:c1870982-1870837 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
