Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 143567..144072 | Replicon | chromosome |
Accession | NZ_CP053028 | ||
Organism | Pseudomonas aeruginosa PAO1 |
Toxin (Protein)
Gene name | parE | Uniprot ID | V6A7K8 |
Locus tag | HKX07_RS00660 | Protein ID | WP_003083773.1 |
Coordinates | 143567..143848 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | Q9I707 |
Locus tag | HKX07_RS00665 | Protein ID | WP_003112628.1 |
Coordinates | 143845..144072 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HKX07_RS00635 | 138818..140167 | + | 1350 | WP_003142411.1 | C4-dicarboxylate transporter DctA | - |
HKX07_RS00640 | 140216..140902 | + | 687 | WP_003083762.1 | FadR family transcriptional regulator | - |
HKX07_RS00645 | 141003..141737 | + | 735 | WP_003115036.1 | GntR family transcriptional regulator | - |
HKX07_RS00650 | 141941..142327 | + | 387 | WP_014602345.1 | aegerolysin family protein | - |
HKX07_RS00655 | 142359..143267 | - | 909 | WP_003083769.1 | LysR family transcriptional regulator | - |
HKX07_RS00660 | 143567..143848 | - | 282 | WP_003083773.1 | type II toxin-antitoxin system toxin ParE | Toxin |
HKX07_RS00665 | 143845..144072 | - | 228 | WP_003112628.1 | CopG family ribbon-helix-helix protein | Antitoxin |
HKX07_RS00670 | 144248..144868 | - | 621 | WP_003101226.1 | hypothetical protein | - |
HKX07_RS00675 | 144969..145469 | + | 501 | WP_003112629.1 | LEA type 2 family protein | - |
HKX07_RS00680 | 145542..145883 | + | 342 | WP_003101229.1 | alkylphosphonate utilization protein | - |
HKX07_RS00685 | 145965..147392 | - | 1428 | WP_003083784.1 | GABA permease | - |
HKX07_RS00690 | 147561..149054 | - | 1494 | WP_003101230.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10462.19 Da Isoelectric Point: 10.0435
>T155813 WP_003083773.1 NZ_CP053028:c143848-143567 [Pseudomonas aeruginosa PAO1]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
Download Length: 282 bp
>T155813 NZ_CP068816:1949270-1949521 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTCATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTCATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATTATTGAGTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8568.64 Da Isoelectric Point: 5.5740
>AT155813 WP_003112628.1 NZ_CP053028:c144072-143845 [Pseudomonas aeruginosa PAO1]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHIEIEKRWGLQ
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHIEIEKRWGLQ
Download Length: 228 bp
>AT155813 NZ_CP068816:1949518-1949772 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAAATTATCAAAGATACACGCAGAACACCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GCTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAAATTATCAAAGATACACGCAGAACACCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GCTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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