Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2247827..2247909 | Replicon | chromosome |
| Accession | NZ_CP053013 | ||
| Organism | Dickeya zeae strain MS_2014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2247829..2247909 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2247827..2247909 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ580_RS10110 (HJ580_10115) | 2243034..2243774 | - | 741 | WP_019845029.1 | amino acid ABC transporter permease | - |
| HJ580_RS10115 (HJ580_10120) | 2243824..2244660 | - | 837 | WP_102801717.1 | transporter substrate-binding domain-containing protein | - |
| HJ580_RS10120 (HJ580_10125) | 2244799..2245191 | - | 393 | WP_016941272.1 | RidA family protein | - |
| HJ580_RS10125 (HJ580_10130) | 2245595..2246347 | + | 753 | WP_102801718.1 | IclR family transcriptional regulator | - |
| HJ580_RS10130 (HJ580_10135) | 2246456..2246944 | + | 489 | WP_019845032.1 | hypothetical protein | - |
| HJ580_RS10135 (HJ580_10140) | 2247012..2247338 | - | 327 | WP_102801719.1 | hypothetical protein | - |
| - | 2247827..2247909 | + | 83 | - | - | Antitoxin |
| - | 2247829..2247909 | - | 81 | - | - | Toxin |
| HJ580_RS10140 (HJ580_10145) | 2248079..2248417 | - | 339 | WP_038916239.1 | YebY family protein | - |
| HJ580_RS10145 (HJ580_10150) | 2248713..2249108 | + | 396 | WP_102801720.1 | hypothetical protein | - |
| HJ580_RS10150 (HJ580_10155) | 2249202..2250479 | - | 1278 | WP_033581676.1 | YeaH/YhbH family protein | - |
| HJ580_RS10155 (HJ580_10160) | 2250516..2252450 | - | 1935 | WP_012884836.1 | protein kinase YeaG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T155753 NZ_CP053013:c2247909-2247829 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT155753 NZ_CP053013:2247827-2247909 [Dickeya zeae]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
