Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1834885..1835030 | Replicon | chromosome |
| Accession | NZ_CP052761 | ||
| Organism | Klebsiella pneumoniae strain XH210 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1834921..1835023 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1834885..1835030 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJ97_RS08940 | 1830015..1832075 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| RJ97_RS08945 | 1832079..1832738 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| RJ97_RS08950 | 1832817..1833047 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| RJ97_RS08955 | 1833160..1833534 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| RJ97_RS08960 | 1833538..1834407 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| RJ97_RS08965 | 1834424..1834762 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1834885..1835030 | - | 146 | - | - | Antitoxin |
| - | 1834921..1835023 | + | 103 | - | - | Toxin |
| RJ97_RS08970 | 1835398..1835541 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| RJ97_RS08975 | 1835646..1836614 | - | 969 | WP_074439531.1 | VirK/YbjX family protein | - |
| RJ97_RS08980 | 1836771..1837424 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| RJ97_RS08985 | 1837421..1837612 | - | 192 | WP_002911395.1 | YebW family protein | - |
| RJ97_RS08990 | 1837710..1837949 | - | 240 | WP_002911393.1 | YebV family protein | - |
| RJ97_RS08995 | 1838065..1839498 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155564 NZ_CP052761:1834921-1835023 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT155564 NZ_CP052761:c1835030-1834885 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
