Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2947582..2947727 | Replicon | chromosome |
| Accession | NZ_CP052036 | ||
| Organism | Klebsiella pneumoniae strain KPN41053 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2947618..2947720 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2947582..2947727 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH204_RS14000 | 2942712..2944772 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HH204_RS14005 | 2944776..2945435 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HH204_RS14010 | 2945514..2945744 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HH204_RS14015 | 2945857..2946231 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HH204_RS14020 | 2946235..2947104 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HH204_RS14025 | 2947121..2947459 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2947582..2947727 | - | 146 | - | - | Antitoxin |
| - | 2947618..2947720 | + | 103 | - | - | Toxin |
| HH204_RS14030 | 2948095..2948238 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HH204_RS14035 | 2948343..2949311 | - | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| HH204_RS14040 | 2949468..2950121 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| HH204_RS14045 | 2950118..2950309 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HH204_RS14050 | 2950407..2950646 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HH204_RS14055 | 2950762..2952195 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155406 NZ_CP052036:2947618-2947720 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT155406 NZ_CP052036:c2947727-2947582 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
