Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1962280..1962551 | Replicon | chromosome |
| Accession | NZ_CP051765 | ||
| Organism | Escherichia coli strain SCU-113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1962410..1962513 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1962280..1962551 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ30_RS09275 | 1958835..1959497 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ30_RS09280 | 1959521..1960177 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ30_RS09285 | 1960279..1960509 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ30_RS09290 | 1960648..1961022 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HHJ30_RS09295 | 1961026..1961898 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HHJ30_RS09300 | 1961911..1962252 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1962280..1962551 | - | 272 | - | - | Antitoxin |
| - | 1962410..1962513 | + | 104 | - | - | Toxin |
| HHJ30_RS09305 | 1962648..1963304 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| HHJ30_RS09310 | 1963305..1963496 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ30_RS09315 | 1963601..1963837 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ30_RS09320 | 1963955..1965394 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155307 NZ_CP051765:1962410-1962513 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT155307 NZ_CP051765:c1962551-1962280 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
