Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2583736..2584004 | Replicon | chromosome |
| Accession | NZ_CP051753 | ||
| Organism | Escherichia coli strain SCU-102 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2583774..2583877 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2583736..2584004 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ21_RS12195 | 2580893..2582332 | + | 1440 | WP_001366375.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ21_RS12200 | 2582450..2582686 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ21_RS12205 | 2582791..2582982 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ21_RS12210 | 2582983..2583639 | - | 657 | WP_000812730.1 | protein-serine/threonine phosphatase | - |
| - | 2583736..2584004 | + | 269 | - | - | Antitoxin |
| - | 2583774..2583877 | - | 104 | - | - | Toxin |
| HHJ21_RS12215 | 2584034..2584375 | - | 342 | WP_000976471.1 | YebY family protein | - |
| HHJ21_RS12220 | 2584388..2585260 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HHJ21_RS12225 | 2585264..2585638 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HHJ21_RS12230 | 2585777..2586007 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ21_RS12235 | 2586109..2586765 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ21_RS12240 | 2586789..2587451 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2567185..2607798 | 40613 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155288 NZ_CP051753:c2583877-2583774 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155288 NZ_CP051753:2583736-2584004 [Escherichia coli]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATTAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATTAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
