Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2245501..2245772 | Replicon | chromosome |
| Accession | NZ_CP051738 | ||
| Organism | Escherichia coli strain SCU-105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2245631..2245734 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2245501..2245772 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ23_RS10920 | 2242056..2242718 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ23_RS10925 | 2242742..2243398 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ23_RS10930 | 2243500..2243730 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ23_RS10935 | 2243869..2244243 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| HHJ23_RS10940 | 2244247..2245119 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HHJ23_RS10945 | 2245132..2245473 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2245501..2245772 | - | 272 | - | - | Antitoxin |
| - | 2245631..2245734 | + | 104 | - | - | Toxin |
| HHJ23_RS10950 | 2245869..2246525 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HHJ23_RS10955 | 2246526..2246717 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ23_RS10960 | 2246822..2247058 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ23_RS10965 | 2247176..2248615 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155191 NZ_CP051738:2245631-2245734 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT155191 NZ_CP051738:c2245772-2245501 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
