Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2650502..2650773 | Replicon | chromosome |
| Accession | NZ_CP051733 | ||
| Organism | Escherichia coli strain SCU-109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2650540..2650643 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2650502..2650773 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ27_RS12570 | 2647659..2649098 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ27_RS12575 | 2649216..2649452 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ27_RS12580 | 2649557..2649748 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ27_RS12585 | 2649749..2650405 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2650502..2650773 | + | 272 | - | - | Antitoxin |
| - | 2650540..2650643 | - | 104 | - | - | Toxin |
| HHJ27_RS12590 | 2650801..2651142 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HHJ27_RS12595 | 2651155..2652027 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| HHJ27_RS12600 | 2652031..2652405 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ27_RS12605 | 2652544..2652774 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ27_RS12610 | 2652876..2653532 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ27_RS12615 | 2653556..2654218 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2644946..2658083 | 13137 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155135 NZ_CP051733:c2650643-2650540 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT155135 NZ_CP051733:2650502-2650773 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
