Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2166589..2166857 | Replicon | chromosome |
| Accession | NZ_CP051725 | ||
| Organism | Escherichia coli strain SCU-112 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2166717..2166819 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2166589..2166857 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ29_RS10015 | 2163141..2163803 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ29_RS10020 | 2163827..2164483 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ29_RS10025 | 2164586..2164816 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ29_RS10030 | 2164955..2165329 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ29_RS10035 | 2165333..2166205 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HHJ29_RS10040 | 2166218..2166559 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2166589..2166857 | - | 269 | - | - | Antitoxin |
| - | 2166717..2166819 | + | 103 | - | - | Toxin |
| HHJ29_RS10045 | 2166954..2167610 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HHJ29_RS10050 | 2167611..2167802 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HHJ29_RS10055 | 2167907..2168143 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ29_RS10060 | 2168261..2169700 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155049 NZ_CP051725:2166717-2166819 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155049 NZ_CP051725:c2166857-2166589 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
