Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
Location | 3768291..3768649 | Replicon | chromosome |
Accession | NZ_CP051719 | ||
Organism | Escherichia coli strain SCU-116 |
Toxin (Protein)
Gene name | ccdB | Uniprot ID | - |
Locus tag | HHJ31_RS18115 | Protein ID | WP_001332330.1 |
Coordinates | 3768527..3768649 (+) | Length | 41 a.a. |
Antitoxin (Protein)
Gene name | ccdA | Uniprot ID | V0VEX8 |
Locus tag | HHJ31_RS18110 | Protein ID | WP_000125566.1 |
Coordinates | 3768291..3768524 (+) | Length | 78 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HHJ31_RS18085 | 3763364..3763651 | + | 288 | WP_000203741.1 | ferredoxin-like protein FixX | - |
HHJ31_RS18090 | 3763710..3765041 | + | 1332 | WP_001183207.1 | MFS transporter | - |
HHJ31_RS18095 | 3765149..3765679 | + | 531 | WP_000600749.1 | glutathione-regulated potassium-efflux system oxidoreductase KefF | - |
HHJ31_RS18100 | 3765672..3767534 | + | 1863 | WP_000377122.1 | glutathione-regulated potassium-efflux system protein KefC | - |
HHJ31_RS18105 | 3767726..3768205 | + | 480 | WP_000624375.1 | type 3 dihydrofolate reductase | - |
HHJ31_RS18110 | 3768291..3768524 | + | 234 | WP_000125566.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin |
HHJ31_RS18115 | 3768527..3768649 | + | 123 | WP_001332330.1 | CcdB family protein | Toxin |
HHJ31_RS18120 | 3768690..3768842 | + | 153 | WP_146692624.1 | CcdB family protein | - |
HHJ31_RS18125 | 3768839..3769687 | - | 849 | WP_000257201.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
HHJ31_RS18130 | 3769694..3770071 | - | 378 | WP_000610901.1 | Co2+/Mg2+ efflux protein ApaG | - |
HHJ31_RS18135 | 3770074..3770895 | - | 822 | WP_001065363.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
HHJ31_RS18140 | 3770892..3771881 | - | 990 | WP_000241229.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
HHJ31_RS18145 | 3771881..3773167 | - | 1287 | WP_000800457.1 | peptidylprolyl isomerase SurA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 41 a.a. Molecular weight: 4563.34 Da Isoelectric Point: 10.9266
>T155033 WP_001332330.1 NZ_CP051719:3768527-3768649 [Escherichia coli]
MQFTVYRSRGRNAAFPFVIDVTSDIVGEINRRIVIPLTPI
MQFTVYRSRGRNAAFPFVIDVTSDIVGEINRRIVIPLTPI
Download Length: 123 bp
>T155033 NZ_CP068607:c9300-9025 [Klebsiella pneumoniae]
ATGACCACAAGGACGATTGAATACTCAGGCCAGTTCCAGAAAGATGTGAAGAAGGCTCAGAAACGTCATAAAGACATGAG
CAAGCTTAAAGCCCTTATGACGCTGTTAATCAATGATGCCTTGCCATTGCCTCAAGTCTACAAAGATCACCCTCTACAGG
GGAACTACAAAGGCTATAGGGATGCTCACATAGAACCGGACTGGCTACTCATCTACAAGATAACTGATGAAGTCCTACGC
TTTGAGCGAACCGGAACACATTCAGACCTGTTTTGA
ATGACCACAAGGACGATTGAATACTCAGGCCAGTTCCAGAAAGATGTGAAGAAGGCTCAGAAACGTCATAAAGACATGAG
CAAGCTTAAAGCCCTTATGACGCTGTTAATCAATGATGCCTTGCCATTGCCTCAAGTCTACAAAGATCACCCTCTACAGG
GGAACTACAAAGGCTATAGGGATGCTCACATAGAACCGGACTGGCTACTCATCTACAAGATAACTGATGAAGTCCTACGC
TTTGAGCGAACCGGAACACATTCAGACCTGTTTTGA
Antitoxin
Download Length: 78 a.a. Molecular weight: 8530.53 Da Isoelectric Point: 5.8062
>AT155033 WP_000125566.1 NZ_CP051719:3768291-3768524 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
Download Length: 234 bp
>AT155033 NZ_CP068607:c9564-9304 [Klebsiella pneumoniae]
ATGGCCGCAAATGCATTTGTTCGTGCTCGTATAGATGAAACACTGAAAAATGAAGCTGCAGTAGTGCTTGCCGGAATGGG
CTTAACCGTTTCCGATCTGGTTCGTATCACTCTGACTAAGGTAGCCAAAGAAAAGGCTCTGCCGTTCGATATGCGTGTTC
CTAATGAGCTTACTGCTAATACCATCGCTAACAGTGAGAAAGGCGTAGACGTTCATACAGCTAAAGATGCTGATGATCTG
TTTAATCAGCTTGGTATCTGA
ATGGCCGCAAATGCATTTGTTCGTGCTCGTATAGATGAAACACTGAAAAATGAAGCTGCAGTAGTGCTTGCCGGAATGGG
CTTAACCGTTTCCGATCTGGTTCGTATCACTCTGACTAAGGTAGCCAAAGAAAAGGCTCTGCCGTTCGATATGCGTGTTC
CTAATGAGCTTACTGCTAATACCATCGCTAACAGTGAGAAAGGCGTAGACGTTCATACAGCTAAAGATGCTGATGATCTG
TTTAATCAGCTTGGTATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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