Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2203308..2203576 | Replicon | chromosome |
| Accession | NZ_CP051714 | ||
| Organism | Escherichia coli strain SCU-122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2203436..2203538 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2203308..2203576 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ35_RS10345 | 2199862..2200524 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ35_RS10350 | 2200547..2201203 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ35_RS10355 | 2201305..2201535 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ35_RS10360 | 2201674..2202048 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ35_RS10365 | 2202052..2202924 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ35_RS10370 | 2202937..2203278 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2203308..2203576 | - | 269 | - | - | Antitoxin |
| - | 2203436..2203538 | + | 103 | - | - | Toxin |
| HHJ35_RS10375 | 2203673..2204329 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| HHJ35_RS10380 | 2204330..2204521 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ35_RS10385 | 2204626..2204862 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ35_RS10390 | 2204980..2206419 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154958 NZ_CP051714:2203436-2203538 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT154958 NZ_CP051714:c2203576-2203308 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
