Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 417512..417780 | Replicon | chromosome |
| Accession | NZ_CP051700 | ||
| Organism | Escherichia coli strain SCU-125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 417640..417742 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 417512..417780 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ38_RS02095 | 414065..414727 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ38_RS02100 | 414751..415407 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ38_RS02105 | 415509..415739 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ38_RS02110 | 415878..416252 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ38_RS02115 | 416256..417128 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ38_RS02120 | 417141..417482 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 417512..417780 | - | 269 | - | - | Antitoxin |
| - | 417640..417742 | + | 103 | - | - | Toxin |
| HHJ38_RS02125 | 417877..418533 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HHJ38_RS02130 | 418476..418721 | - | 246 | WP_050517955.1 | YebW family protein | - |
| HHJ38_RS02135 | 418826..419062 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ38_RS02140 | 419180..420619 | - | 1440 | WP_024187959.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154869 NZ_CP051700:417640-417742 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT154869 NZ_CP051700:c417780-417512 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
