Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017235..2017503 | Replicon | chromosome |
| Accession | NZ_CP051688 | ||
| Organism | Escherichia coli strain SCU-387 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017363..2017465 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017235..2017503 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ48_RS09695 | 2013788..2014450 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ48_RS09700 | 2014474..2015130 | - | 657 | WP_096972765.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ48_RS09705 | 2015232..2015462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ48_RS09710 | 2015601..2015975 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ48_RS09715 | 2015979..2016851 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HHJ48_RS09720 | 2016864..2017205 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2017235..2017503 | - | 269 | - | - | Antitoxin |
| - | 2017363..2017465 | + | 103 | - | - | Toxin |
| HHJ48_RS09725 | 2017600..2018256 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| HHJ48_RS09730 | 2018257..2018448 | - | 192 | WP_024186842.1 | YebW family protein | - |
| HHJ48_RS09735 | 2018553..2018789 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ48_RS09740 | 2018908..2020347 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154766 NZ_CP051688:2017363-2017465 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT154766 NZ_CP051688:c2017503-2017235 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
