Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2113263..2113825 Replicon chromosome
Accession NZ_CP051666
Organism Marinobacterium sp. LSUCC0821

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag HH196_RS10285 Protein ID WP_169452031.1
Coordinates 2113263..2113577 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag HH196_RS10290 Protein ID WP_169452032.1
Coordinates 2113577..2113825 (-) Length 83 a.a.

Genomic Context

HH196_RS10255HH196_RS10265HH196_RS10270HH196_RS10275HH196_RS10295HH196_RS10300HH196_RS10305HH196_RS10260HH196_RS10280HH196_RS10285HH196_RS10290
Location: 2108925..2109473 (549 bp)
Type: Others
Protein ID: WP_169452025.1
Location: 2109920..2111212 (1293 bp)
Type: Others
Protein ID: WP_169452027.1
Location: 2111449..2111754 (306 bp)
Type: Others
Protein ID: WP_169452028.1
Location: 2111765..2112379 (615 bp)
Type: Others
Protein ID: WP_169452029.1
Location: 2114436..2115593 (1158 bp)
Type: Others
Protein ID: WP_211160788.1
Location: 2115616..2116272 (657 bp)
Type: Others
Protein ID: WP_169452034.1
Location: 2116350..2116547 (198 bp)
Type: Others
Protein ID: WP_169452035.1
Location: 2109478..2109840 (363 bp)
Type: Others
Protein ID: WP_169452026.1
Location: 2112436..2113182 (747 bp)
Type: Others
Protein ID: WP_169452030.1
Location: 2113263..2113577 (315 bp)
Type: Toxin
Protein ID: WP_169452031.1
Location: 2113577..2113825 (249 bp)
Type: Antitoxin
Protein ID: WP_169452032.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HH196_RS102552108925..2109473+549WP_169452025.1YaeQ family protein-
HH196_RS102602109478..2109840-363WP_169452026.1outer membrane protein assembly factor BamE-
HH196_RS102652109920..2111212+1293WP_169452027.1DEAD/DEAH box helicase-
HH196_RS102702111449..2111754+306WP_169452028.1hypothetical protein-
HH196_RS102752111765..2112379+615WP_169452029.1hypothetical protein-
HH196_RS102802112436..2113182-747WP_169452030.1class II aldolase/adducin family protein-
HH196_RS102852113263..2113577-315WP_169452031.1type II toxin-antitoxin system RelE/ParE family toxinToxin
HH196_RS102902113577..2113825-249WP_169452032.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
HH196_RS102952114436..2115593+1158WP_211160788.1integrase arm-type DNA-binding domain-containing protein-
HH196_RS103002115616..2116272+657WP_169452034.1hypothetical protein-
HH196_RS103052116350..2116547+198WP_169452035.1AlpA family phage regulatory protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(9-96)

Antitoxin

Antitoxin ParD

(2-79)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12255.96 Da        Isoelectric Point: 9.3389

>T154739 WP_169452031.1 NZ_CP051666:c2113577-2113263 [Marinobacterium sp. LSUCC0821]
MSKKLVRRVRVTPRAYDDLKNIGRYTERTWGNSQRNHYLKSLETCFKSLAEDPFLGRHRTDICEGYYSLPKGQHVVFYLI
GHETIDMIGIPHKNMDTINYFSES

Download         Length: 315 bp

>T154739 NZ_CP068239:c5020751-5020164 [Pseudomonas aeruginosa]
ATGTCGAGGAGGGCGCCCATGTTCAAGCCGCTACCGATCACCCTGCAGCGCGGAGCCTTGCGTCTCGAGCCGCTGGTGGA
AGCGGACATTCCCGAGCTGGTGAGCCTCGCCGAAGCCAACCGCGAGGCGCTGCAGTACATGGACGGACCGACGCGGCCGG
ACTGGTACCGCCAGAGCCTCGTCGAGCAGCGCGAGGGCAGGGCGTTGCCGCTCGCCGTCCGCCTCGGCGTGCAACTGGTC
GGGACCACGCGCTTCGCCGAATTCCTTCCCGCCTTGCCGGCCTGCGAGATCGGCTGGACCTGGCTCGACCAGGCCCAGCA
CGGCAGCGGCCTGAACCGCATGATCAAGTACCTGATGCTCAAGCATGCCTTCGACAACCTGCGCATGGTCCGCGTGCAGC
TCAGCACGGCGGCGAGCAACCTGCGCGCCCAGGGCGCCATCGACAAGCTCGGCGCGCAGCGCGAGGGCGTACTGCGCAAC
CACCGGCGGCTGGCCGGCGGGCGGCTAGACGACACCTTCGTCTACAGCATCACCGACCACGAATGGCCGCAGGTCAAGGC
GGCGCTGGAAGCCAGCTTCACCGGCTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8986.01 Da        Isoelectric Point: 4.6510

>AT154739 WP_169452032.1 NZ_CP051666:c2113825-2113577 [Marinobacterium sp. LSUCC0821]
VATTSLSLGEHWEAFIKNEISSGRYGSASEVVRDALRAMEERKSKIEALRAHLSEGALQAKNGKFVEDFTMDSLIADLDA
ES

Download         Length: 249 bp

>AT154739 NZ_CP068239:c5020097-5019243 [Pseudomonas aeruginosa]
GTGCCGGACGAGACGAGCGGAGAACACACGCATTTCTGGCGCGCCGCCGAACTGGGCGGCGTCGAACTGCTGCACGCGCG
CTATGTGGAGCAGCGCTTCGCGCCGCACGTGCACAGCAGCTTCGCCCTGGTCATCATCGAGCAGGGCGCGCAGCGCTTCC
GCCATCGTGGCGGCGAGCACCTGGCCCCGCTGGGCAGCATGGTGCTGATCAACCCCGACGAAGTGCACACCGGCTCCAAG
GCCCATGATGCCGGTTGGCTCTATCGCGGCTACTACCCGGAAATGGAACAGATCGACGGGATTCTCGACGAGCTGGAAAT
CCATCATGGCGGCGTGCCGCGTTTCGCCGACAGCGTGATCCACGACCAGCCCCTGGCACGCGCCTTCGTCCACTTGCACC
GCCTGCTGGCCGAGCATGCCGGCAGCCTGGAAACCCAGACCCGCTGGCGCGAGACGATGCTCGCCCTGTTCCGTCGCCAC
GCCCGCCTGCCAGAAGCGCCGAAGGCCGGGCAGGAGCCGTTGGCGGTGGCCCGCGCCCGCGAACTGCTGGCGGCGCGGTT
GCTCGATCCGCCTTCGCTGGAGGAACTGGCGGCGGCGGTCAATCTGTCCCCGTTCCATTTTGCCCGGGTCTTCCGTCGCG
CCACCGGCATGCCGCCCCACGCCTGGCTCAGACAGCGCCGCCTGGAGCAGGCCAGGGCACTGCTCAAGAGCGGCCGGGCG
CCGCTGGAGGTGGCCCTGGAGCTGGGCTTCGCCGACCAGAGCCACCTCGGTCGCCAGTTCAAGCAGGCCTACGGGGTGGC
ACCGGGTGAATACCGCTCGGCCTGCGCGCGCTCGTCCTTGACGACATACGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References