Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 513124..513392 Replicon chromosome
Accession NZ_CP051661
Organism Escherichia coli strain 1162T7

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 513162..513264 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 513124..513392 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HH201_RS02555 510282..511721 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HH201_RS02560 511838..512074 + 237 WP_001295499.1 YebV family protein -
HH201_RS02565 512179..512370 + 192 WP_001296140.1 YebW family protein -
HH201_RS02570 512371..513027 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 513124..513392 + 269 - - Antitoxin
- 513162..513264 - 103 - - Toxin
HH201_RS02575 513422..513763 - 342 WP_000976472.1 YebY family protein -
HH201_RS02580 513776..514648 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
HH201_RS02585 514652..515026 - 375 WP_000168747.1 CopC domain-containing protein YobA -
HH201_RS02590 515165..515395 + 231 WP_000916763.1 DNA polymerase III subunit theta -
HH201_RS02595 515497..516153 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
HH201_RS02600 516177..516839 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T154672 NZ_CP051661:c513264-513162 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT154672 NZ_CP051661:513124-513392 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References