Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3605109..3605943 | Replicon | chromosome |
| Accession | NZ_CP051659 | ||
| Organism | Escherichia coli strain 1162C | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PLF5 |
| Locus tag | HH202_RS17830 | Protein ID | WP_000854690.1 |
| Coordinates | 3605566..3605943 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1P7N8 |
| Locus tag | HH202_RS17825 | Protein ID | WP_001305076.1 |
| Coordinates | 3605109..3605477 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH202_RS17785 (3600191) | 3600191..3601318 | + | 1128 | Protein_3485 | hypothetical protein | - |
| HH202_RS17790 (3601394) | 3601394..3601849 | + | 456 | WP_000581502.1 | IrmA family protein | - |
| HH202_RS17795 (3601928) | 3601928..3602161 | + | 234 | WP_000902034.1 | DUF905 family protein | - |
| HH202_RS17800 (3602262) | 3602262..3603080 | + | 819 | WP_001234620.1 | DUF932 domain-containing protein | - |
| HH202_RS17805 (3603135) | 3603135..3603620 | + | 486 | WP_000849565.1 | antirestriction protein | - |
| HH202_RS17810 (3603636) | 3603636..3604112 | + | 477 | WP_001186726.1 | RadC family protein | - |
| HH202_RS17815 (3604175) | 3604175..3604396 | + | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| HH202_RS17820 (3604415) | 3604415..3605059 | + | 645 | WP_000094916.1 | hypothetical protein | - |
| HH202_RS17825 (3605109) | 3605109..3605477 | + | 369 | WP_001305076.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HH202_RS17830 (3605566) | 3605566..3605943 | + | 378 | WP_000854690.1 | TA system toxin CbtA family protein | Toxin |
| HH202_RS17835 (3605940) | 3605940..3606428 | + | 489 | WP_000761699.1 | DUF5983 family protein | - |
| HH202_RS17840 (3606445) | 3606445..3606642 | + | 198 | WP_000839293.1 | DUF957 domain-containing protein | - |
| HH202_RS17845 (3606727) | 3606727..3607572 | + | 846 | WP_001529401.1 | DUF4942 domain-containing protein | - |
| HH202_RS17850 (3607641) | 3607641..3608036 | + | 396 | WP_000208384.1 | DUF6088 family protein | - |
| HH202_RS17855 (3608029) | 3608029..3608962 | + | 934 | Protein_3499 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HH202_RS17860 (3609379) | 3609379..3609549 | + | 171 | Protein_3500 | IS110 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3561056..3608036 | 46980 | |
| - | flank | IS/Tn | - | - | 3609394..3609549 | 155 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14057.04 Da Isoelectric Point: 9.1510
>T154662 WP_000854690.1 NZ_CP051659:3605566-3605943 [Escherichia coli]
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
Download Length: 378 bp
>T154662 NZ_CP068211:c6515039-6514758 [Achromobacter xylosoxidans]
GTGCCCGCAGTTGAATGGTCGTCCGCCGCCCGGGCCGACCTGTTGGCCATAGTCGACTACATATCAGATGACAATCCAGA
CGCTGCCCAACGTCTGAAAGACGATATTGAAACGAAGGCGGCGCAACTGCCCGCCCGTCCCGCGCTGTACCGCCCCGGAA
GGATCGCCGGTACCCGCGAAATGGTCGTTCGCGCGAATTACATCATCGTGTATGCGGCGGATGCGCTGGCCGTGCGGATC
CTGCGCATCTTGCATGCCGCGCAGCAATGGCCGCCGCAGTGA
GTGCCCGCAGTTGAATGGTCGTCCGCCGCCCGGGCCGACCTGTTGGCCATAGTCGACTACATATCAGATGACAATCCAGA
CGCTGCCCAACGTCTGAAAGACGATATTGAAACGAAGGCGGCGCAACTGCCCGCCCGTCCCGCGCTGTACCGCCCCGGAA
GGATCGCCGGTACCCGCGAAATGGTCGTTCGCGCGAATTACATCATCGTGTATGCGGCGGATGCGCTGGCCGTGCGGATC
CTGCGCATCTTGCATGCCGCGCAGCAATGGCCGCCGCAGTGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13560.39 Da Isoelectric Point: 4.7830
>AT154662 WP_001305076.1 NZ_CP051659:3605109-3605477 [Escherichia coli]
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
Download Length: 369 bp
>AT154662 NZ_CP068211:c6515322-6515026 [Achromobacter xylosoxidans]
ATGCCCCAGACCTCGATGCTCCACGTCCGCGTGGACGACAAGCTCAAAGCCGACGCCACCGAAAAGCTGGCCGAATTCGG
CCTGACGATTTCCGACGCCGTGCGCATCCTGCTCACGCGGGTGGCCAAGGAGGGCGGCCTGCCCGCCGGGTTGACCACCG
ATGCCCAGGCGCACGACGCGTGGTTCCGCGCCAAAGTCCAGGAAGCCCTGGCCGATACGGGGCCGGCGGTGCCGCACCAG
CAGGTCATGGATGAAGCCCAGGCGCTGATCGACAGGAAGCGCCGTGCCCGCAGTTGA
ATGCCCCAGACCTCGATGCTCCACGTCCGCGTGGACGACAAGCTCAAAGCCGACGCCACCGAAAAGCTGGCCGAATTCGG
CCTGACGATTTCCGACGCCGTGCGCATCCTGCTCACGCGGGTGGCCAAGGAGGGCGGCCTGCCCGCCGGGTTGACCACCG
ATGCCCAGGCGCACGACGCGTGGTTCCGCGCCAAAGTCCAGGAAGCCCTGGCCGATACGGGGCCGGCGGTGCCGCACCAG
CAGGTCATGGATGAAGCCCAGGCGCTGATCGACAGGAAGCGCCGTGCCCGCAGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|