Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2264354..2264622 | Replicon | chromosome |
| Accession | NZ_CP051659 | ||
| Organism | Escherichia coli strain 1162C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2264392..2264494 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2264354..2264622 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH202_RS11455 | 2261512..2262951 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HH202_RS11460 | 2263068..2263304 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HH202_RS11465 | 2263409..2263600 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HH202_RS11470 | 2263601..2264257 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2264354..2264622 | + | 269 | - | - | Antitoxin |
| - | 2264392..2264494 | - | 103 | - | - | Toxin |
| HH202_RS11475 | 2264652..2264993 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HH202_RS11480 | 2265006..2265878 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| HH202_RS11485 | 2265882..2266256 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HH202_RS11490 | 2266395..2266625 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HH202_RS11495 | 2266727..2267383 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HH202_RS11500 | 2267407..2268069 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154651 NZ_CP051659:c2264494-2264392 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT154651 NZ_CP051659:2264354-2264622 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
