Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3785857..3786005 | Replicon | chromosome |
| Accession | NZ_CP051548 | ||
| Organism | Phytobacter diazotrophicus strain UAEU22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3785857..3785959 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3785857..3786005 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHA33_RS18070 | 3781402..3781641 | + | 240 | WP_169039583.1 | DUF1480 family protein | - |
| HHA33_RS18075 | 3781746..3781937 | + | 192 | WP_039078749.1 | YebW family protein | - |
| HHA33_RS18080 | 3781938..3782582 | - | 645 | WP_169039584.1 | protein-serine/threonine phosphatase | - |
| HHA33_RS18085 | 3782754..3783698 | + | 945 | WP_169039585.1 | VirK/YbjX family protein | - |
| HHA33_RS18090 | 3784304..3784522 | - | 219 | WP_039078747.1 | hypothetical protein | - |
| HHA33_RS18095 | 3784945..3785388 | - | 444 | WP_107223421.1 | hypothetical protein | - |
| - | 3785857..3785959 | - | 103 | - | - | Toxin |
| - | 3785857..3786005 | + | 149 | - | - | Antitoxin |
| HHA33_RS18100 | 3786116..3786457 | - | 342 | WP_103245693.1 | YebY family protein | - |
| HHA33_RS18105 | 3786472..3787341 | - | 870 | WP_079496722.1 | copper homeostasis membrane protein CopD | - |
| HHA33_RS18110 | 3787343..3787717 | - | 375 | WP_108701598.1 | CopC domain-containing protein YobA | - |
| HHA33_RS18115 | 3787855..3788085 | + | 231 | WP_039078743.1 | DNA polymerase III subunit theta | - |
| HHA33_RS18120 | 3788082..3788759 | + | 678 | WP_039078742.1 | exodeoxyribonuclease X | - |
| HHA33_RS18125 | 3788756..3790816 | - | 2061 | WP_039078741.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154420 NZ_CP051548:c3785959-3785857 [Phytobacter diazotrophicus]
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT154420 NZ_CP051548:3785857-3786005 [Phytobacter diazotrophicus]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
