Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4000540..4000685 | Replicon | chromosome |
| Accession | NZ_CP051490 | ||
| Organism | Klebsiella pneumoniae strain M297-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4000547..4000649 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4000540..4000685 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGK25_RS19440 (HGK25_19815) | 3996072..3997505 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HGK25_RS19445 (HGK25_19820) | 3997621..3997860 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HGK25_RS19450 (HGK25_19825) | 3997958..3998149 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HGK25_RS19455 (HGK25_19830) | 3998146..3998799 | - | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| HGK25_RS19460 (HGK25_19835) | 3998956..3999924 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HGK25_RS19465 (HGK25_19840) | 4000029..4000172 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4000540..4000685 | + | 146 | - | - | Antitoxin |
| - | 4000547..4000649 | - | 103 | - | - | Toxin |
| HGK25_RS19470 (HGK25_19845) | 4000808..4001146 | - | 339 | WP_065888598.1 | YebY family protein | - |
| HGK25_RS19475 (HGK25_19850) | 4001163..4002032 | - | 870 | WP_065888599.1 | copper homeostasis membrane protein CopD | - |
| HGK25_RS19480 (HGK25_19855) | 4002036..4002410 | - | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| HGK25_RS19485 (HGK25_19860) | 4002523..4002753 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HGK25_RS19490 (HGK25_19865) | 4002832..4003491 | + | 660 | WP_004145547.1 | exodeoxyribonuclease X | - |
| HGK25_RS19495 (HGK25_19870) | 4003495..4005555 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154315 NZ_CP051490:c4000649-4000547 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT154315 NZ_CP051490:4000540-4000685 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
