Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2890363..2890527 | Replicon | chromosome |
| Accession | NZ_CP051488 | ||
| Organism | Kosakonia sp. SMBL-WEM22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2890365..2890467 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2890363..2890527 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF650_RS13765 | 2887333..2888448 | + | 1116 | WP_187799163.1 | recombinase RecT | - |
| HF650_RS13770 | 2888483..2888659 | + | 177 | WP_187799164.1 | hypothetical protein | - |
| HF650_RS13775 | 2888656..2888898 | + | 243 | WP_187799165.1 | DUF4060 family protein | - |
| HF650_RS13780 | 2888964..2889233 | + | 270 | WP_054803282.1 | excisionase | - |
| HF650_RS13785 | 2889205..2890287 | + | 1083 | WP_187799166.1 | tyrosine-type recombinase/integrase | - |
| - | 2890363..2890527 | + | 165 | - | - | Antitoxin |
| - | 2890365..2890467 | - | 103 | - | - | Toxin |
| HF650_RS13790 | 2890614..2890958 | - | 345 | WP_187799167.1 | YebY family protein | - |
| HF650_RS13795 | 2890977..2891846 | - | 870 | WP_187799168.1 | copper homeostasis membrane protein CopD | - |
| HF650_RS13800 | 2891848..2892222 | - | 375 | WP_187799169.1 | CopC domain-containing protein YobA | - |
| HF650_RS13805 | 2892359..2892589 | + | 231 | WP_034813210.1 | DNA polymerase III subunit theta | - |
| HF650_RS13810 | 2892601..2893263 | + | 663 | WP_187799170.1 | exodeoxyribonuclease X | - |
| HF650_RS13815 | 2893264..2895318 | - | 2055 | WP_187799171.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2840908..2895318 | 54410 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154294 NZ_CP051488:c2890467-2890365 [Kosakonia sp. SMBL-WEM22]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 165 bp
>AT154294 NZ_CP051488:2890363-2890527 [Kosakonia sp. SMBL-WEM22]
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCATCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTCAG
AAAAA
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCATCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTCAG
AAAAA
