Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1586635..1587257 | Replicon | chromosome |
| Accession | NZ_CP051487 | ||
| Organism | Pseudomonas umsongensis strain CY-1 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | HGP31_RS07160 | Protein ID | WP_168757370.1 |
| Coordinates | 1587078..1587257 (-) | Length | 60 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | S2F1Z4 |
| Locus tag | HGP31_RS07155 | Protein ID | WP_020798399.1 |
| Coordinates | 1586635..1587042 (-) | Length | 136 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGP31_RS07125 | 1582058..1582696 | + | 639 | WP_033044291.1 | LysE family translocator | - |
| HGP31_RS07130 | 1582796..1584142 | + | 1347 | WP_168759137.1 | sensor domain-containing diguanylate cyclase | - |
| HGP31_RS07140 | 1584490..1584993 | + | 504 | WP_020798396.1 | DUF4142 domain-containing protein | - |
| HGP31_RS07145 | 1585039..1585449 | - | 411 | WP_020798397.1 | low affinity iron permease family protein | - |
| HGP31_RS07150 | 1585708..1586478 | + | 771 | WP_020798398.1 | trans-aconitate 2-methyltransferase | - |
| HGP31_RS07155 | 1586635..1587042 | - | 408 | WP_020798399.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| HGP31_RS07160 | 1587078..1587257 | - | 180 | WP_168757370.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| HGP31_RS07170 | 1587950..1588834 | - | 885 | WP_020798401.1 | alpha/beta hydrolase | - |
| HGP31_RS07175 | 1589145..1589837 | - | 693 | WP_033045509.1 | pseudouridine synthase | - |
| HGP31_RS07180 | 1589872..1590090 | - | 219 | WP_020798403.1 | cysteine-rich CWC family protein | - |
| HGP31_RS07185 | 1590077..1591570 | - | 1494 | WP_020798404.1 | sensor domain-containing diguanylate cyclase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 60 a.a. Molecular weight: 6774.07 Da Isoelectric Point: 11.7594
>T154288 WP_168757370.1 NZ_CP051487:c1587257-1587078 [Pseudomonas umsongensis]
VNSRFLISQLVADGWYLVRIRGSHHHFKHPTKPGLVTVPHPKKDLLKKTAIRILQQALL
VNSRFLISQLVADGWYLVRIRGSHHHFKHPTKPGLVTVPHPKKDLLKKTAIRILQQALL
Download Length: 180 bp
>T154288 NZ_CP067992:844607-845377 [Streptococcus mitis]
ATGGAAATCCAAGATTATACCGATAGTGAATTCAAACATGCTTTGGCACGGAATCTTCGTTCTCTGACAAGAGGAAAAAA
GTCCAGTAAGCAACCTATAGCGATTTTGCTTGGAGGGCAAAGTGGTGCTGGCAAGACTACAATTCATCGTATTAAACAGA
AAGAATTTCAAGGAAATATTGTTATCATAGATGGTGATAGTTTTCGTTCTCAGCATCCACACTATTTAGAACTGCAGCAA
GAATATGGCAAAGATAGTGTAAAATACACCAAAGATTTTGCGGGAAAAATGGTGGAGTCTTTAGTAAGAGAATTGAGTCA
TTTGGGATACAATCTTTTGATAGAGGGAACCTTACGAACAATTGATGTTCCAAAGAAAACAGCACAACTATTGAAAAATA
AGGGATATGAAGTACAATTAGCATTGATTGCGACAAAGCCTAAGCTGTCCTATCTGAGTACCCTTATCCGATACGAAGAA
CTATACGCTATCAATCCAAATCAAGCACGCGCGACTCCAAAAGAATATCATGATTTCATTGTAAATCATCTAGTTGATAA
TACACGACAATTGGAAGAACTAGCTATCTTTGAAAGAATTCAAATTTATCAACGAGATAGAAGTTGTGTATATGATTCAA
AAGAAAATACAACTTCAGCAGCAACCGTTCTTCAAGAGTTACTCTTTGGGGAGTGGAGTCAGGTAGAGAAAGAGATGCTT
AAATCTGGAGAAGAAAGATTGAGAGATTTAACTAATCGAAATGGTTGTTAG
ATGGAAATCCAAGATTATACCGATAGTGAATTCAAACATGCTTTGGCACGGAATCTTCGTTCTCTGACAAGAGGAAAAAA
GTCCAGTAAGCAACCTATAGCGATTTTGCTTGGAGGGCAAAGTGGTGCTGGCAAGACTACAATTCATCGTATTAAACAGA
AAGAATTTCAAGGAAATATTGTTATCATAGATGGTGATAGTTTTCGTTCTCAGCATCCACACTATTTAGAACTGCAGCAA
GAATATGGCAAAGATAGTGTAAAATACACCAAAGATTTTGCGGGAAAAATGGTGGAGTCTTTAGTAAGAGAATTGAGTCA
TTTGGGATACAATCTTTTGATAGAGGGAACCTTACGAACAATTGATGTTCCAAAGAAAACAGCACAACTATTGAAAAATA
AGGGATATGAAGTACAATTAGCATTGATTGCGACAAAGCCTAAGCTGTCCTATCTGAGTACCCTTATCCGATACGAAGAA
CTATACGCTATCAATCCAAATCAAGCACGCGCGACTCCAAAAGAATATCATGATTTCATTGTAAATCATCTAGTTGATAA
TACACGACAATTGGAAGAACTAGCTATCTTTGAAAGAATTCAAATTTATCAACGAGATAGAAGTTGTGTATATGATTCAA
AAGAAAATACAACTTCAGCAGCAACCGTTCTTCAAGAGTTACTCTTTGGGGAGTGGAGTCAGGTAGAGAAAGAGATGCTT
AAATCTGGAGAAGAAAGATTGAGAGATTTAACTAATCGAAATGGTTGTTAG
Antitoxin
Download Length: 136 a.a. Molecular weight: 14701.81 Da Isoelectric Point: 4.7465
>AT154288 WP_020798399.1 NZ_CP051487:c1587042-1586635 [Pseudomonas umsongensis]
MLYPIAISMGDEEHAWGVEVPDIPGCFSAGEDLDDAMAMAREAIEGHFEILAEGGSPIPPANKVTLHAANPKYTGCAWAL
VDIDVTKYLGKAQKLNITLPGYLLNRIDEYVLHHPEEKSRSGFLASAALKVLQQR
MLYPIAISMGDEEHAWGVEVPDIPGCFSAGEDLDDAMAMAREAIEGHFEILAEGGSPIPPANKVTLHAANPKYTGCAWAL
VDIDVTKYLGKAQKLNITLPGYLLNRIDEYVLHHPEEKSRSGFLASAALKVLQQR
Download Length: 408 bp
>AT154288 NZ_CP067992:844131-844607 [Streptococcus mitis]
ATGATTGGAAAGAACATAAAATCCTTACGTAAAACACATGACTTAACCCAACCCGAATTTGCACGGATTGTAGGTATTTC
ACGTAATAGTCTGAGTCGATATGAAAATGGAACGAGTTCAGTTTCTACCGAATTAATAGACATCATTTGTCAGAAGTTTA
ATGTATCTTATGTCGATATTGTAGGAGAAGATAAAATGCTCAATCCTGTTGAAGATTATGAATTGACTTTAAAAATTGAA
ATTGTGAAAGAAAGAGGTGCTAATCTTTTATCTCGACTCTATCGATATCAAGATAGTCAGGGAATTAGCATTGATGATGA
ATCTAATCCTTGGATTTTAATGAGTGATGATCTATCTGACTTGATTCATACGAATATCTATTTGGTAGAAACTTTTGATG
AAATAGAGAGATATATCGGTTATTTGGATGGAATTGAACGTATGTTAGAGATATCTGAAAAACGGATGGTAGCCTAA
ATGATTGGAAAGAACATAAAATCCTTACGTAAAACACATGACTTAACCCAACCCGAATTTGCACGGATTGTAGGTATTTC
ACGTAATAGTCTGAGTCGATATGAAAATGGAACGAGTTCAGTTTCTACCGAATTAATAGACATCATTTGTCAGAAGTTTA
ATGTATCTTATGTCGATATTGTAGGAGAAGATAAAATGCTCAATCCTGTTGAAGATTATGAATTGACTTTAAAAATTGAA
ATTGTGAAAGAAAGAGGTGCTAATCTTTTATCTCGACTCTATCGATATCAAGATAGTCAGGGAATTAGCATTGATGATGA
ATCTAATCCTTGGATTTTAATGAGTGATGATCTATCTGACTTGATTCATACGAATATCTATTTGGTAGAAACTTTTGATG
AAATAGAGAGATATATCGGTTATTTGGATGGAATTGAACGTATGTTAGAGATATCTGAAAAACGGATGGTAGCCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|