Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2307942..2308024 Replicon chromosome
Accession NZ_CP051460
Organism Dickeya solani strain IFB0421

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2307944..2308024 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2307942..2308024 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HAT92_RS10250 2303806..2304903 - 1098 WP_022633455.1 HDOD domain-containing protein -
HAT92_RS10255 2304894..2306009 - 1116 WP_022633456.1 sensor histidine kinase -
HAT92_RS10260 2306002..2307126 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
HAT92_RS10265 2307439..2307723 + 285 WP_023637794.1 aminopeptidase -
- 2307942..2308024 + 83 - - Antitoxin
- 2307944..2308024 - 81 - - Toxin
HAT92_RS10270 2308194..2308532 - 339 WP_022633458.1 YebY family protein -
HAT92_RS10275 2309051..2309494 + 444 WP_022633459.1 hypothetical protein -
HAT92_RS10280 2309846..2310094 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
HAT92_RS10285 2310211..2311953 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2301688..2310094 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T154168 NZ_CP051460:c2308024-2307944 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT154168 NZ_CP051460:2307942-2308024 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References