Detailed information of TA system TA154163

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): cptAB/Cpta(toxin)
• Location: 734191..734869
• Replicon: chromosome
• Accession: NZ_CP051460
• Organism: Dickeya solani strain IFB0421

Toxin (Protein)

• Gene name: cptA
• Uniprot ID: -
• Locus tag: HAT92_RS03455
• Protein ID: WP_023637601.1
• Coordinates: 734438..734869 (+)
• Length: 144 a.a.

Antitoxin (Protein)

• Gene name: cptB
• Uniprot ID: A0A2K8QSU7
• Locus tag: HAT92_RS03450
• Protein ID: WP_023637600.1
• Coordinates: 734191..734457 (+)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
HAT92_RS03430	730641..731291	+	651	WP_022632163.1	LysE family translocator	-
HAT92_RS03435	731362..731970	-	609	WP_022632164.1	HD domain-containing protein	-
HAT92_RS03440	732180..732830	+	651	WP_022632165.1	hemolysin III family protein	-
HAT92_RS03445	732904..733884	-	981	WP_022632166.1	tRNA-modifying protein YgfZ	-
HAT92_RS03450	734191..734457	+	267	WP_023637600.1	FAD assembly factor SdhE	Antitoxin
HAT92_RS03455	734438..734869	+	432	WP_023637601.1	protein YgfX	Toxin
HAT92_RS03460	734969..735487	-	519	WP_022632169.1	flavodoxin FldB	-
HAT92_RS03465	735616..736941	-	1326	WP_022632170.1	MHS family MFS transporter	-
HAT92_RS03470	737204..738103	+	900	WP_022632171.1	site-specific tyrosine recombinase XerD	-
HAT92_RS03475	738193..738900	+	708	WP_022632172.1	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Inner membrane protein YgfX (2-132)

Antitoxin

• Flavinator of succinate dehydrogenase (8-79)

Sequences

Toxin

Protein

• Length: 144 a.a.
• Molecular weight: 16808.51 Da
• Isoelectric Point: 11.7737

>T154163 WP_023637601.1 NZ_CP051460:734438-734869 [Dickeya solani]
VAQWQCDLRVSWRMQLFSLLTHGFLVLMILLAPWPDGYAPLWLGLVTLVVFGFVRSQRIIKSRQGEISLHGENQLHWQQR
DWQIARRPWVMRNGVLLSLRATTGKGHQRLWLASDSMGNEEWRLLRQLLQQHPLQGTESSRHH

Nucleotide

• Length: 432 bp

>T154163 NZ_CP067389:c6177-5872 [Klebsiella grimontii]
ATGCAGTTTAAGGTTTATGCCTATAAAAGAGAGAGCCGCTATCGTCTGTTCGTGGATGTGCAGAGTGACATCATCGATAC
CCCCGGGCGACGGATGGTGATCCCGCTGGCCAGCGCCCGGCTGCTGTCGGATAAGGTTTCCTGTGAACTCTATCCGGTGG
TGCACATCGGGGATGAAAGCTACCGCCTGATGACCACGGACATGGCCAGCGTCACGTCCTCCGTCACCGGGGAGGAAGTG
GCCGATCTCAGCCACCGGGAAAATGACATCAAAAATGCGATAAACCTGATGTTCTGGGGAATTTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 10544.03 Da
• Isoelectric Point: 5.5535

>AT154163 WP_023637600.1 NZ_CP051460:734191-734457 [Dickeya solani]
MDINNKSRIHWACRRGMRELDISIMPFFEHEYDTLSDDDKQHFIRLLQCDDPDLFNWLMNHGEPVDPELKRMVSLIQTRN
KDRGPVAM

Nucleotide

• Length: 267 bp

>AT154163 NZ_CP067389:c6397-6179 [Klebsiella grimontii]
ATGAAGCAGCGCATCACTGTCACCATAGACAGCGACAGTTATCAGTTACTGAAATCCGCAGACGTCAATATCTCCGCCCT
GGTGAACAGGGCCATGCAGAATGAGGCCCGTCGTCTGCGTTCCGAACGCTGGCAGGCTGAAAATCAGGAAGGGATGGCCG
AGGTTGCCCGCTTTATTGAGATGAACGGTTCATTCGCCGACGAAAACAGGGACTGGTGA

Structures

Antitoxin

• AlphaFold DB: A0A2K8QSU7