Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2293185..2293267 Replicon chromosome
Accession NZ_CP051457
Organism Dickeya solani strain IFB0167

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2293187..2293267 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2293185..2293267 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HAT87_RS10185 2289049..2290146 - 1098 WP_022633455.1 HDOD domain-containing protein -
HAT87_RS10190 2290137..2291252 - 1116 WP_022633456.1 sensor histidine kinase -
HAT87_RS10195 2291245..2292369 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
HAT87_RS10200 2292682..2292966 + 285 WP_023637794.1 aminopeptidase -
- 2293185..2293267 + 83 - - Antitoxin
- 2293187..2293267 - 81 - - Toxin
HAT87_RS10205 2293437..2293775 - 339 WP_022633458.1 YebY family protein -
HAT87_RS10210 2294294..2294737 + 444 WP_022633459.1 hypothetical protein -
HAT87_RS10215 2295089..2295337 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
HAT87_RS10220 2295454..2297196 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2286931..2295337 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T154130 NZ_CP051457:c2293267-2293187 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT154130 NZ_CP051457:2293185-2293267 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References