Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 347737..348008 | Replicon | chromosome |
| Accession | NZ_CP051430 | ||
| Organism | Escherichia sp. SCLE84 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 347867..347970 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 347737..348008 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGD79_RS01855 | 344292..344954 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HGD79_RS01860 | 344978..345634 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HGD79_RS01865 | 345736..345966 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HGD79_RS01870 | 346105..346479 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HGD79_RS01875 | 346483..347355 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HGD79_RS01880 | 347368..347709 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 347737..348008 | - | 272 | - | - | Antitoxin |
| - | 347867..347970 | + | 104 | - | - | Toxin |
| HGD79_RS01885 | 348105..348761 | + | 657 | WP_168848269.1 | protein-serine/threonine phosphatase | - |
| HGD79_RS01890 | 348762..348953 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HGD79_RS01895 | 349058..349294 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HGD79_RS01900 | 349412..350851 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T154093 NZ_CP051430:347867-347970 [Escherichia sp. SCLE84]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT154093 NZ_CP051430:c348008-347737 [Escherichia sp. SCLE84]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
