Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2208898..2208991 | Replicon | chromosome |
| Accession | NZ_CP051429 | ||
| Organism | Dickeya dianthicola strain 67-19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2208900..2208991 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2208898..2208991 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI48_RS10215 | 2204756..2205853 | - | 1098 | WP_192991229.1 | HDOD domain-containing protein | - |
| HGI48_RS10220 | 2205844..2206959 | - | 1116 | WP_192991230.1 | sensor histidine kinase | - |
| HGI48_RS10225 | 2206952..2208076 | - | 1125 | WP_192991231.1 | FIST C-terminal domain-containing protein | - |
| HGI48_RS10230 | 2208397..2208819 | + | 423 | WP_192991232.1 | hypothetical protein | - |
| - | 2208898..2208991 | + | 94 | - | - | Antitoxin |
| - | 2208900..2208991 | - | 92 | - | - | Toxin |
| HGI48_RS10235 | 2209150..2209488 | - | 339 | WP_192991233.1 | YebY family protein | - |
| HGI48_RS10240 | 2209935..2210378 | + | 444 | WP_192991468.1 | hypothetical protein | - |
| HGI48_RS10245 | 2210722..2210970 | + | 249 | WP_192991234.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| HGI48_RS10250 | 2211231..2212505 | - | 1275 | WP_192991235.1 | YeaH/YhbH family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2202896..2210970 | 8074 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 bp
>T154082 NZ_CP051429:c2208991-2208900 [Dickeya dianthicola]
AGCCTGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTT
CGGTCTTTTTTT
AGCCTGCAACAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTT
CGGTCTTTTTTT
Antitoxin
Download Length: 94 bp
>AT154082 NZ_CP051429:2208898-2208991 [Dickeya dianthicola]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTGTTGCAGGCT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTGTTGCAGGCT
