Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 2155181..2155737 Replicon chromosome
Accession NZ_CP051429
Organism Dickeya dianthicola strain 67-19

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HGI48_RS09960 Protein ID WP_192991193.1
Coordinates 2155181..2155486 (-) Length 102 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HGI48_RS09965 Protein ID WP_161132187.1
Coordinates 2155474..2155737 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HGI48_RS09935 2150267..2150905 - 639 WP_192991190.1 ribonuclease T2 -
HGI48_RS09940 2151449..2152063 - 615 WP_192991466.1 NUDIX domain-containing protein -
HGI48_RS09945 2152247..2153002 + 756 WP_192991467.1 DeoR/GlpR family DNA-binding transcription regulator -
HGI48_RS09950 2153008..2153961 - 954 WP_192991191.1 LysR family transcriptional regulator -
HGI48_RS09955 2154063..2154989 + 927 WP_192991192.1 carbon-nitrogen hydrolase family protein -
HGI48_RS09960 2155181..2155486 - 306 WP_192991193.1 hypothetical protein Toxin
HGI48_RS09965 2155474..2155737 - 264 WP_161132187.1 ribbon-helix-helix domain-containing protein Antitoxin
HGI48_RS09980 2156679..2157416 + 738 WP_192991194.1 phosphatase -
HGI48_RS09985 2157462..2158043 + 582 WP_192991195.1 molecular chaperone -
HGI48_RS09990 2158074..2158637 - 564 WP_192991196.1 lipoprotein -
HGI48_RS09995 2158773..2159420 - 648 WP_192991197.1 glutaredoxin 2 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Ribbon-helix-helix protein, CopG

(3-38)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11665.90 Da        Isoelectric Point: 3.8147

>T154081 WP_192991193.1 NZ_CP051429:c2155486-2155181 [Dickeya dianthicola]
MPQVIVTEKARQGINRCLIFLENNSADYIINDVKNAVADSLDNLEKELITGFISDEEDEDDFLYEVIIPYGDSGYEYCYF
IDAQGSYIVVGFKHQKENDYY

Download         Length: 306 bp

>T154081 NZ_CP067311:1749239-1749457 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10017.44 Da        Isoelectric Point: 9.7939

>AT154081 WP_161132187.1 NZ_CP051429:c2155737-2155474 [Dickeya dianthicola]
MAVSVKLDTLLEERLARLAAKRNRTKHYLMKQAIVSYVDAEEQKERLRQQAQSSYVNYLNTGNHLTGKEVVDFLRSGKNG
ELPECHK

Download         Length: 264 bp

>AT154081 NZ_CP067311:1748839-1749213 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References