Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5197539..5197707 | Replicon | chromosome |
| Accession | NZ_CP051427 | ||
| Organism | Klebsiella michiganensis strain X2-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5197597..5197700 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5197539..5197707 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI13_RS24675 | 5192666..5194726 | + | 2061 | WP_009652043.1 | oligopeptidase B | - |
| HGI13_RS24680 | 5194733..5195392 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| HGI13_RS24685 | 5195471..5195701 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HGI13_RS24690 | 5195837..5196211 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| HGI13_RS24695 | 5196216..5197085 | + | 870 | WP_086531112.1 | copper homeostasis membrane protein CopD | - |
| HGI13_RS24700 | 5197102..5197440 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 5197539..5197707 | - | 169 | - | - | Antitoxin |
| - | 5197597..5197700 | + | 104 | - | - | Toxin |
| HGI13_RS24705 | 5197825..5198784 | - | 960 | WP_009652026.1 | spore coat protein U domain-containing protein | - |
| HGI13_RS24710 | 5198799..5201129 | - | 2331 | WP_209744547.1 | fimbria/pilus outer membrane usher protein | - |
| HGI13_RS24715 | 5201132..5201896 | - | 765 | WP_004852081.1 | fimbria/pilus periplasmic chaperone | - |
| HGI13_RS24720 | 5201915..5202433 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T154064 NZ_CP051427:5197597-5197700 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT154064 NZ_CP051427:c5197707-5197539 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
