Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/RelE-RHH |
| Location | 12628..13175 | Replicon | plasmid p24350-2 |
| Accession | NZ_CP051388 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24350 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | E9LLH3 |
| Locus tag | HFR97_RS24370 | Protein ID | WP_000969996.1 |
| Coordinates | 12894..13175 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | K4JYR0 |
| Locus tag | HFR97_RS24365 | Protein ID | WP_000079928.1 |
| Coordinates | 12628..12897 (+) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFR97_RS24335 | 7771..7974 | + | 204 | WP_001327131.1 | hypothetical protein | - |
| HFR97_RS24340 | 8717..9178 | + | 462 | WP_000760078.1 | thermonuclease family protein | - |
| HFR97_RS24345 | 9886..10092 | + | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | - |
| HFR97_RS24350 | 10376..10624 | + | 249 | WP_000083835.1 | replication regulatory protein RepA | - |
| HFR97_RS24355 | 10871..10945 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HFR97_RS24360 | 10938..11714 | + | 777 | WP_015059632.1 | IncF replication protein RepA1 | - |
| HFR97_RS24365 | 12628..12897 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin |
| HFR97_RS24370 | 12894..13175 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HFR97_RS24375 | 13260..13607 | + | 348 | WP_001115718.1 | hypothetical protein | - |
| HFR97_RS24380 | 13625..14215 | - | 591 | WP_000194550.1 | hypothetical protein | - |
| HFR97_RS24385 | 14215..14469 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| HFR97_RS24390 | 14821..15246 | + | 426 | Protein_15 | DUF4238 domain-containing protein | - |
| HFR97_RS24395 | 15415..16623 | - | 1209 | WP_000198533.1 | IS91 family transposase | - |
| HFR97_RS24400 | 16604..16876 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| HFR97_RS24405 | 17091..17906 | + | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..120420 | 120420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 12066.38 Da Isoelectric Point: 12.7685
>T154040 WP_000969996.1 NZ_CP051388:12894-13175 [Salmonella enterica subsp. enterica serovar Typhimurium]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKK
Download Length: 282 bp
>T154040 NZ_CP067303:3769145-3769609 [Escherichia coli]
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGTTCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGA
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGTTCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 11553.68 Da Isoelectric Point: 12.7493
>AT154040 WP_000079928.1 NZ_CP051388:12628-12897 [Salmonella enterica subsp. enterica serovar Typhimurium]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKK
Download Length: 270 bp
>AT154040 NZ_CP067303:3768810-3769145 [Escherichia coli]
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | E9LLH3 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A5W2J4D0 |