Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2181772..2182043 | Replicon | chromosome |
| Accession | NZ_CP051219 | ||
| Organism | Escherichia coli strain SFE8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2181902..2182005 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2181772..2182043 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF527_RS10585 | 2178327..2178989 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HF527_RS10590 | 2179013..2179669 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HF527_RS10595 | 2179771..2180001 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HF527_RS10600 | 2180140..2180514 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HF527_RS10605 | 2180518..2181390 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HF527_RS10610 | 2181403..2181744 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2181772..2182043 | - | 272 | - | - | Antitoxin |
| - | 2181902..2182005 | + | 104 | - | - | Toxin |
| HF527_RS10615 | 2182140..2182796 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HF527_RS10620 | 2182797..2182988 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HF527_RS10625 | 2183093..2183329 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HF527_RS10630 | 2183447..2184886 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153854 NZ_CP051219:2181902-2182005 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT153854 NZ_CP051219:c2182043-2181772 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
