Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2218741..2218886 | Replicon | chromosome |
| Accession | NZ_CP051218 | ||
| Organism | Salmonella sp. SCFS4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2218781..2218884 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2218741..2218886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF553_RS10775 | 2215167..2215865 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| HF553_RS10780 | 2215889..2216545 | - | 657 | WP_023227121.1 | carbon-nitrogen hydrolase family protein | - |
| HF553_RS10785 | 2216653..2216883 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| HF553_RS10790 | 2217021..2217395 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| HF553_RS10795 | 2217396..2218271 | + | 876 | WP_001579467.1 | copper homeostasis membrane protein CopD | - |
| HF553_RS10800 | 2218288..2218641 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2218741..2218886 | - | 146 | - | - | Antitoxin |
| - | 2218781..2218884 | + | 104 | - | - | Toxin |
| HF553_RS10805 | 2219005..2219745 | - | 741 | WP_072162123.1 | tyrosine-type recombinase/integrase | - |
| HF553_RS10810 | 2219910..2220895 | + | 986 | Protein_2116 | DUF1353 domain-containing protein | - |
| HF553_RS10815 | 2220944..2221053 | + | 110 | Protein_2117 | tail fiber assembly protein | - |
| HF553_RS10820 | 2221144..2221329 | - | 186 | WP_071787785.1 | hypothetical protein | - |
| HF553_RS10825 | 2221765..2222535 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| HF553_RS10830 | 2223016..2223153 | + | 138 | Protein_2120 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2213081..2239931 | 26850 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153829 NZ_CP051218:2218781-2218884 [Salmonella sp. SCFS4]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153829 NZ_CP051218:c2218886-2218741 [Salmonella sp. SCFS4]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
