Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130930..2131073 | Replicon | chromosome |
| Accession | NZ_CP051213 | ||
| Organism | Salmonella enterica strain SCSW714 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130968..2131071 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130930..2131073 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGB43_RS10345 | 2127354..2128052 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| HGB43_RS10350 | 2128076..2128732 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| HGB43_RS10355 | 2128840..2129070 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| HGB43_RS10360 | 2129208..2129582 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| HGB43_RS10365 | 2129583..2130458 | + | 876 | WP_023137953.1 | copper homeostasis membrane protein CopD | - |
| HGB43_RS10370 | 2130475..2130828 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2130930..2131073 | - | 144 | - | - | Antitoxin |
| - | 2130968..2131071 | + | 104 | - | - | Toxin |
| HGB43_RS10375 | 2131202..2131549 | - | 348 | Protein_2040 | tyrosine-type recombinase/integrase | - |
| HGB43_RS23910 | 2131561..2131644 | + | 84 | Protein_2041 | phage tail protein | - |
| HGB43_RS10385 | 2131817..2134237 | + | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| HGB43_RS10395 | 2134379..2134920 | + | 542 | Protein_2043 | transposase | - |
| HGB43_RS10400 | 2135066..2135206 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| HGB43_RS10405 | 2135372..2135641 | - | 270 | WP_077908593.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153806 NZ_CP051213:2130968-2131071 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT153806 NZ_CP051213:c2131073-2130930 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
