Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 101515..102124 Replicon chromosome
Accession NZ_CP051168
Organism [Phormidium] sp. ETS-05

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HEQ85_RS00570 Protein ID WP_199247856.1
Coordinates 101515..101880 (-) Length 122 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HEQ85_RS00575 Protein ID WP_199247857.1
Coordinates 101870..102124 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HEQ85_RS00545 97480..98106 + 627 WP_199247852.1 hypothetical protein -
HEQ85_RS00550 98292..98543 + 252 WP_199247853.1 hypothetical protein -
HEQ85_RS00555 98556..99590 - 1035 WP_199250100.1 CHAT domain-containing protein -
HEQ85_RS00560 99530..100921 - 1392 WP_199247854.1 tetratricopeptide repeat protein -
HEQ85_RS00565 101046..101240 - 195 WP_199247855.1 DUF433 domain-containing protein -
HEQ85_RS00570 101515..101880 - 366 WP_199247856.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HEQ85_RS00575 101870..102124 - 255 WP_199247857.1 hypothetical protein Antitoxin
HEQ85_RS00580 102295..102504 - 210 WP_199250101.1 hypothetical protein -
HEQ85_RS00585 102573..103196 - 624 WP_199247858.1 hypothetical protein -
HEQ85_RS00590 103472..104329 + 858 WP_199247859.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(59-111)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 122 a.a.        Molecular weight: 13873.95 Da        Isoelectric Point: 9.2054

>T153694 WP_199247856.1 NZ_CP051168:c101880-101515 [[Phormidium] sp. ETS-05]
MLNDKPLVQIDLTPQYKRNLRDLSKKYRRIRLDTQPIIEELQRGNFTGDRLAGMGEDYLIFKVRVKNTDIQKGKSGGYRM
IYQVESPTSVLLLTIYAKSDVADISPNEISSILAEFYGESL

Download         Length: 366 bp

>T153694 NZ_CP067042:c474870-474583 [Lacticaseibacillus rhamnosus]
ATGATGTTGACGATTAATCGCACGCGCACTTTCAAACGACAATTTAAACATCTTCTTAGGCAAGGTAAAGATATGACGAA
ACTTGCAACTGCAATTGATACTTTGCAGCGTCAAGATCGTGTAAAATTAGCTTCTTTACACGACCATGCTTTAAAGGGTG
CTCACAGCGGCGAACGAGCATTGCGTGTTGCTCCTGATTGGCTTCTCGTTTATAAAGTCGATGCTGAAGCGTTAATTTTA
ATGCTTCTTGCAACAGGCACACACCGCGATACATTGAACATTGAGTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9320.63 Da        Isoelectric Point: 4.1532

>AT153694 WP_199247857.1 NZ_CP051168:c102124-101870 [[Phormidium] sp. ETS-05]
MKAVEVTGTLDEKGQLSLDQAIENCAPSRVRVIVLFPEVMEGEEIDPDDTPVEEIKASLRRALQEAKAGKRIPLSQMWEG
LDVE

Download         Length: 255 bp

>AT153694 NZ_CP067042:c475126-474854 [Lacticaseibacillus rhamnosus]
ATGGAAACAAAATCCCGTATCAGCGTGCGAATTGATACCAAAACCAAAGAACGGGCTCTCCATGTCCTCAATAGCATGGG
ACTAGATATGTCCTCAGCTATTAACATGTATTTGAAACGCATTGGTGACACTGGTGAGTTGCCATTTACACCTGAAATGT
CGTTCGCCGATCAGCTTCAAGCTGCAGAAGCTGATGTTAAAGCGGGACGAACTAAGAGCTTCAAGACCGTTGATGCCCTG
ATGAAGGATTTATACAATGATGTTGACGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References