Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1836314..1836459 | Replicon | chromosome |
| Accession | NZ_CP051161 | ||
| Organism | Klebsiella pneumoniae strain 16BU137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1836350..1836452 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1836314..1836459 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF572_RS08860 | 1831444..1833504 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HF572_RS08865 | 1833508..1834167 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HF572_RS08870 | 1834246..1834476 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HF572_RS08875 | 1834589..1834963 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HF572_RS08880 | 1834967..1835836 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| HF572_RS08885 | 1835853..1836191 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1836314..1836459 | - | 146 | - | - | Antitoxin |
| - | 1836350..1836452 | + | 103 | - | - | Toxin |
| HF572_RS08890 | 1836827..1836970 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HF572_RS08895 | 1837075..1838043 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HF572_RS08900 | 1838200..1838853 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| HF572_RS08905 | 1838850..1839041 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HF572_RS08910 | 1839139..1839378 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HF572_RS08915 | 1839494..1840927 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153656 NZ_CP051161:1836350-1836452 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153656 NZ_CP051161:c1836459-1836314 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
