Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994943..1995088 | Replicon | chromosome |
| Accession | NZ_CP051160 | ||
| Organism | Klebsiella pneumoniae strain KP20191015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994979..1995081 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994943..1995088 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF573_RS09890 | 1990073..1992133 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HF573_RS09895 | 1992137..1992796 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| HF573_RS09900 | 1992875..1993105 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HF573_RS09905 | 1993218..1993592 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HF573_RS09910 | 1993596..1994465 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HF573_RS09915 | 1994482..1994820 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1994943..1995088 | - | 146 | - | - | Antitoxin |
| - | 1994979..1995081 | + | 103 | - | - | Toxin |
| HF573_RS09920 | 1995456..1995599 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HF573_RS09925 | 1995704..1996672 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HF573_RS09930 | 1996829..1997482 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HF573_RS09935 | 1997479..1997670 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HF573_RS09940 | 1997768..1998007 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HF573_RS09945 | 1998123..1999556 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153638 NZ_CP051160:1994979-1995081 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153638 NZ_CP051160:c1995088-1994943 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
