Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1057592..1057737 | Replicon | chromosome |
| Accession | NZ_CP051159 | ||
| Organism | Klebsiella pneumoniae strain 19PDR22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1057599..1057701 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1057592..1057737 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF574_RS05420 | 1053124..1054557 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HF574_RS05425 | 1054673..1054912 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HF574_RS05430 | 1055010..1055201 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HF574_RS05435 | 1055198..1055851 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HF574_RS05440 | 1056008..1056976 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HF574_RS05445 | 1057081..1057224 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1057592..1057737 | + | 146 | - | - | Antitoxin |
| - | 1057599..1057701 | - | 103 | - | - | Toxin |
| HF574_RS05450 | 1057860..1058198 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HF574_RS05455 | 1058215..1059084 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| HF574_RS05460 | 1059088..1059462 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HF574_RS05465 | 1059575..1059805 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HF574_RS05470 | 1059884..1060543 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HF574_RS05475 | 1060547..1062607 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153613 NZ_CP051159:c1057701-1057599 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153613 NZ_CP051159:1057592-1057737 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
