Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3565765..3566003 | Replicon | chromosome |
| Accession | NZ_CP051158 | ||
| Organism | Escherichia coli strain 17MR471 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3565895..3565998 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3565765..3566003 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF575_RS16715 | 3562321..3562983 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HF575_RS16720 | 3563007..3563663 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HF575_RS16725 | 3563765..3563995 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HF575_RS16730 | 3564134..3564508 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HF575_RS16735 | 3564512..3565384 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| HF575_RS16740 | 3565397..3565738 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3565765..3566003 | - | 239 | - | - | Antitoxin |
| - | 3565895..3565998 | + | 104 | - | - | Toxin |
| HF575_RS16745 | 3566092..3567063 | + | 972 | WP_170386723.1 | IS30-like element ISApl1 family transposase | - |
| HF575_RS16750 | 3567205..3567861 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HF575_RS16755 | 3567862..3568053 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HF575_RS16760 | 3568158..3568394 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HF575_RS16765 | 3568512..3569951 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3545686..3582946 | 37260 | |
| - | flank | IS/Tn | - | - | 3566140..3567063 | 923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153600 NZ_CP051158:3565895-3565998 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 239 bp
>AT153600 NZ_CP051158:c3566003-3565765 [Escherichia coli]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGT
CAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGT
CAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
