Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2301156..2301988 | Replicon | chromosome |
| Accession | NZ_CP051158 | ||
| Organism | Escherichia coli strain 17MR471 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A0H2VCF5 |
| Locus tag | HF575_RS10865 | Protein ID | WP_000854681.1 |
| Coordinates | 2301156..2301533 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | HF575_RS10870 | Protein ID | WP_088474659.1 |
| Coordinates | 2301623..2301988 (-) | Length | 122 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF575_RS10830 | 2296237..2296836 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| HF575_RS10835 | 2296839..2297816 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| HF575_RS10840 | 2297813..2298991 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| HF575_RS10845 | 2298993..2299529 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| HF575_RS10850 | 2299810..2300652 | - | 843 | WP_001529559.1 | DUF4942 domain-containing protein | - |
| HF575_RS10855 | 2300737..2300934 | - | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| HF575_RS10860 | 2301010..2301159 | - | 150 | Protein_2098 | hypothetical protein | - |
| HF575_RS10865 | 2301156..2301533 | - | 378 | WP_000854681.1 | TA system toxin CbtA family protein | Toxin |
| HF575_RS10870 | 2301623..2301988 | - | 366 | WP_088474659.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HF575_RS10875 | 2302066..2302287 | - | 222 | WP_000692300.1 | DUF987 domain-containing protein | - |
| HF575_RS10880 | 2302350..2302826 | - | 477 | WP_001186171.1 | RadC family protein | - |
| HF575_RS10885 | 2302841..2303326 | - | 486 | WP_000206670.1 | antirestriction protein | - |
| HF575_RS10890 | 2303418..2304236 | - | 819 | WP_001175163.1 | DUF945 domain-containing protein | - |
| HF575_RS10895 | 2304326..2304559 | - | 234 | WP_073506913.1 | DUF905 family protein | - |
| HF575_RS10900 | 2304565..2305242 | - | 678 | WP_001097301.1 | hypothetical protein | - |
| HF575_RS10905 | 2305390..2306070 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13963.89 Da Isoelectric Point: 7.4348
>T153596 WP_000854681.1 NZ_CP051158:c2301533-2301156 [Escherichia coli]
MKTLPDTHIREASHCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTSHNYRTVNNITLGKHPEAKR
MKTLPDTHIREASHCPSPVTIWQTLLTRLLDQHYGLALNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTSHNYRTVNNITLGKHPEAKR
Download Length: 378 bp
>T153596 NZ_CP066983:3615273-3615764 [Xanthomonas campestris pv. campestris]
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
CGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCTA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGTCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
CGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCTA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGTCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
Antitoxin
Download Length: 122 a.a. Molecular weight: 13554.36 Da Isoelectric Point: 6.2034
>AT153596 WP_088474659.1 NZ_CP051158:c2301988-2301623 [Escherichia coli]
VSDTLPGTTYPDNNNRPWWGLPCTVMPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYHLDQAFPLLMKQLELMLTSGE
LSPRYQHTVTLYAKGLTCEADTFGSCGYVYLAVYPTPETKT
VSDTLPGTTYPDNNNRPWWGLPCTVMPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYHLDQAFPLLMKQLELMLTSGE
LSPRYQHTVTLYAKGLTCEADTFGSCGYVYLAVYPTPETKT
Download Length: 366 bp
>AT153596 NZ_CP066983:3614986-3615276 [Xanthomonas campestris pv. campestris]
ATGTCCACACCCAACACTACGCCCGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACAGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTTATCGCGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
ATGTCCACACCCAACACTACGCCCGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACAGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTTATCGCGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|