Detailed information of TA system TA153562

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): PumAB/COG3657-dnstrm_HI1420
• Location: 2355117..2355713
• Replicon: chromosome
• Accession: NZ_CP051132
• Organism: Enterobacter hormaechei strain AMS-38

Toxin (Protein)

• Gene name: PumA
• Uniprot ID: -
• Locus tag: HDB52_RS11295
• Protein ID: WP_023295756.1
• Coordinates: 2355411..2355713 (-)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: PumB
• Uniprot ID: A0A927HL08
• Locus tag: HDB52_RS11290
• Protein ID: WP_023295755.1
• Coordinates: 2355117..2355404 (-)
• Length: 96 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
HDB52_RS11285	2353489..2355120	+	1632	WP_111999675.1	Na/Pi cotransporter family protein	-
HDB52_RS11290	2355117..2355404	-	288	WP_023295755.1	putative addiction module antidote protein	Antitoxin
HDB52_RS11295	2355411..2355713	-	303	WP_023295756.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
HDB52_RS11300	2355911..2356783	+	873	WP_032646867.1	23S rRNA pseudouridine(2604) synthase RluF	-
HDB52_RS11305	2356784..2357056	-	273	WP_017382612.1	DUF3811 domain-containing protein	-
HDB52_RS11310	2357107..2358051	-	945	WP_032646868.1	ketopantoate/pantoate/pantothenate transporter PanS	-
HDB52_RS11315	2358145..2359494	-	1350	WP_006810501.1	lysine-sensitive aspartokinase 3	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Addiction module killer protein, predicted (3-93)

Antitoxin

• Uncharacterized protein HI1420 (3-90)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 11441.24 Da
• Isoelectric Point: 10.1042

>T153562 WP_023295756.1 NZ_CP051132:c2355713-2355411 [Enterobacter hormaechei]
MKEIVQTESFRRWEQNLKDRRAKTIIASRLFRLANGLAGDIRPVGEGISELRIHFGPGYRIYFKDQGNCIIVLLCGGDKS
SQARDILMAKMLSNVSQWQE

Nucleotide

• Length: 303 bp

>T153562 NZ_CP066968:365853-366005 [Xanthomonas campestris pv. incanae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTCTCGGCTGGCATGATGACTGGCTGTAACACCATGGCTGGTGC
CGGAAAGGACATGCAGGGTGCGGGTGACAAGGTCGAGAAGACCGCCGACAAATGCAGCGACGGTAAGTGCTGA

Antitoxin

Protein

• Length: 96 a.a.
• Molecular weight: 10101.59 Da
• Isoelectric Point: 5.7807

>AT153562 WP_023295755.1 NZ_CP051132:c2355404-2355117 [Enterobacter hormaechei]
MHKLTPYDPANALLDDEEIAVFMADALETGDSAYIAKALGVIARAKGMSTISQQTGLSREQLYRSFSDKGNPTLKTTLAV
MKALGLGLTIKPSGD

Nucleotide

• Length: 288 bp

>AT153562 NZ_CP066968:366082-366216 [Xanthomonas campestris pv. incanae]
ATGAAGCGTGCAATTGCATTGTTGGTGCTGTCGATGTTGTCGGTTGGAATGCTGGCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCTGGCGAGAAGGTGGAAGACGCCGCGCGCAAGTGA