Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 38795..38998 | Replicon | chromosome |
| Accession | NZ_CP051132 | ||
| Organism | Enterobacter hormaechei strain AMS-38 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 38802..38905 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 38795..38998 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HDB52_RS00250 | 34338..34442 | + | 105 | Protein_49 | regulator | - |
| HDB52_RS00255 | 34494..34661 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| HDB52_RS00260 | 34658..35209 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| HDB52_RS00265 | 35206..35424 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| HDB52_RS00270 | 35421..35693 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| HDB52_RS00275 | 35690..35890 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| HDB52_RS00280 | 35982..36197 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| HDB52_RS00285 | 36197..36436 | + | 240 | Protein_56 | DUF4222 domain-containing protein | - |
| HDB52_RS00290 | 36486..37238 | + | 753 | WP_032648687.1 | methyltransferase | - |
| HDB52_RS00295 | 37398..37670 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| HDB52_RS00300 | 37639..38724 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 38795..38998 | + | 204 | - | - | Antitoxin |
| - | 38802..38905 | - | 104 | - | - | Toxin |
| HDB52_RS00305 | 39047..39385 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HDB52_RS00310 | 39402..40271 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| HDB52_RS00315 | 40273..40644 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| HDB52_RS00320 | 40782..41012 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HDB52_RS00325 | 41124..41774 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| HDB52_RS00330 | 41799..42461 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 67..104580 | 104513 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153551 NZ_CP051132:c38905-38802 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT153551 NZ_CP051132:38795-38998 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
