Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3770017..3770848 | Replicon | chromosome |
| Accession | NZ_CP051001 | ||
| Organism | Escherichia coli O157:H16 str. 98-3133 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1P968 |
| Locus tag | BY40_RS18710 | Protein ID | WP_000854814.1 |
| Coordinates | 3770474..3770848 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | C0ST46 |
| Locus tag | BY40_RS18705 | Protein ID | WP_001285587.1 |
| Coordinates | 3770017..3770385 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BY40_RS18670 (3765068) | 3765068..3766138 | + | 1071 | WP_000102631.1 | patatin-like phospholipase family protein | - |
| BY40_RS18675 (3766274) | 3766274..3766951 | + | 678 | WP_001362823.1 | hypothetical protein | - |
| BY40_RS18680 (3766967) | 3766967..3767377 | + | 411 | WP_000846704.1 | hypothetical protein | - |
| BY40_RS18685 (3767598) | 3767598..3768419 | + | 822 | WP_001234710.1 | DUF932 domain-containing protein | - |
| BY40_RS18690 (3768682) | 3768682..3769155 | + | 474 | WP_001373897.1 | antirestriction protein | - |
| BY40_RS18695 (3769171) | 3769171..3769647 | + | 477 | WP_001186773.1 | RadC family protein | - |
| BY40_RS18700 (3769716) | 3769716..3769937 | + | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| BY40_RS18705 (3770017) | 3770017..3770385 | + | 369 | WP_001285587.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin |
| BY40_RS18710 (3770474) | 3770474..3770848 | + | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| BY40_RS18715 (3770845) | 3770845..3771039 | + | 195 | WP_000988601.1 | DUF5983 family protein | - |
| BY40_RS18720 (3771085) | 3771085..3771165 | + | 81 | Protein_3679 | hypothetical protein | - |
| BY40_RS18725 (3771454) | 3771454..3771600 | - | 147 | Protein_3680 | transposase domain-containing protein | - |
| BY40_RS18730 (3771702) | 3771702..3771836 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| BY40_RS18735 (3771937) | 3771937..3772266 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| BY40_RS18740 (3772438) | 3772438..3773496 | - | 1059 | WP_001200894.1 | FUSC family protein | - |
| BY40_RS18745 (3773694) | 3773694..3774167 | - | 474 | WP_001105376.1 | DNA gyrase inhibitor SbmC | - |
| BY40_RS18750 (3774286) | 3774286..3775452 | - | 1167 | WP_001296209.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.94 Da Isoelectric Point: 7.8522
>T153523 WP_000854814.1 NZ_CP051001:3770474-3770848 [Escherichia coli O157:H16 str. 98-3133]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T153523 NZ_CP066945:c1316911-1316420 [Xanthomonas campestris pv. campestris]
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
TGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCCA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGTCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
TGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCCA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGTCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13577.44 Da Isoelectric Point: 6.3139
>AT153523 WP_001285587.1 NZ_CP051001:3770017-3770385 [Escherichia coli O157:H16 str. 98-3133]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHPDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPTPEMKN
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHPDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPTPEMKN
Download Length: 369 bp
>AT153523 NZ_CP066945:c1317198-1316908 [Xanthomonas campestris pv. campestris]
ATGTCCACACCCAACACTACGCCTGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACCGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTCATCACGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
ATGTCCACACCCAACACTACGCCTGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACCGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTCATCACGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|