Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3527251..3527522 | Replicon | chromosome |
| Accession | NZ_CP051001 | ||
| Organism | Escherichia coli O157:H16 str. 98-3133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3527289..3527392 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3527251..3527522 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BY40_RS17300 | 3524408..3525847 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BY40_RS17305 | 3525965..3526201 | + | 237 | WP_001295499.1 | YebV family protein | - |
| BY40_RS17310 | 3526306..3526497 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BY40_RS17315 | 3526498..3527154 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3527251..3527522 | + | 272 | - | - | Antitoxin |
| - | 3527289..3527392 | - | 104 | - | - | Toxin |
| BY40_RS17320 | 3527550..3527891 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BY40_RS17325 | 3527904..3528776 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BY40_RS17330 | 3528780..3529154 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BY40_RS17335 | 3529293..3529523 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BY40_RS17340 | 3529625..3530281 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| BY40_RS17345 | 3530305..3530967 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T153515 NZ_CP051001:c3527392-3527289 [Escherichia coli O157:H16 str. 98-3133]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT153515 NZ_CP051001:3527251-3527522 [Escherichia coli O157:H16 str. 98-3133]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
